Tuesday, November 23, 2010

UPGMA in Python 2

Following up on the previous post (here, and an earlier post here), I wrote some code to extract the data for our UPGMA tree, and plot it using the ape package from R. I updated the zipped project files which are on Dropbox (here). The plot is above, it looks good to me.

To do: test on other examples! [Update: found a bug and updated again.]