We still have more to do in the tutorial, but this post is about the virtual machine with QIIME installed. The website discussion for this is here. My thinking is that for a real 454 or Illumina data set (which I should have at some point in the future), I will want to run "in the cloud." It's all over the web:
If you need milk, would you buy a cow ?'.
To do that I will need to get comfortable with Linux and Qiime in this environment. The Qiime website has discussion about the EC2 "image" (here), but for today's example I used the Virtual Box (VB) with Qiime.
A couple of issues had to be addressed first. There is something called "Guest Additions" that needs to be installed. The way I did it was to do:
and then restart the Qiime VB. The second is to train my brain to use
And finally, I found the password (qiime---had to search the QIIME Forum for that). The Linux install doesn't have
curlso I used:
Then I just followed my own instructions from here and here. I got a failure with:
which I fixed by:
I'm not too worried about the failures. I'll look into it.
There's a screenshot at the top of the post. Looking good.
[ UPDATE: Instructions for shared folders with the host OS here. ]