Thursday, February 24, 2011

Qiime (7) Area Plot


We were plotting a summary chart in QIIME (here). Turns out I just skipped a step:


summarize_taxa.py -i figs/otu_table.txt -o figs/otu_table_Level3.txt -L 3

plot_taxa_summary.py -i figs/otu_table_Level3.txt -l Phylum -o figs -k white

No comments: